/tag/data
Outcomes of Dexmedetomidine During ERCP on Post-ERCP Pancreatitis
Endoscopic retrograde cholangiopancreatography (ERCP) is a procedure in which an endoscope is guided into the first part of the small bowel for various instruments to be passed into the biliary and pancreatic ducts to remove obstructions, drain infectious collections or diagnose diseases of the bile ducts. ERCP is associated with higher rates of complications than other endoscopic procedures, one of the most severe being post-ERCP pancreatitis which is thought to take place in up to 10% of patients.
Dr. Podboy and Internal Medicine Resident Physician Dr. Jason Erno are interested in factors that may contribute to reduced outcomes of post-ERCP pancreatitis, such as the use of dexmedetomidine as an anesthetic agent.
Drosophila Evolution through Space and Time 2.0
Evolutionary biologists use population-based DNA sequencing to gain insight into the nature of adaptation, genetic diversity, and organismal form and function. When collecting DNA data, scientists are often sample limited because of the logistical challenges of collecting DNA from wild individuals across large portions of a species range. This can be mitigated when groups of scientists work together to create data and then share it with the larger community. The Bergland Lab has been a central participant in developing and maintaining DEST (“Drosophila Evolution through Space and Time”), a large (~10TB) repository of Drosophila melanogaster population genomic data which has been processed and standardized.
Mission
Research Computing empowers UVA researchers to achieve more with cutting-edge computational resources. Our support team strives to create innovative solutions for researchers who need help solving complex optimization, parallelization, workflow, and data analysis issues. We build and maintain the University’s best computing platforms while educating the next generation of researchers on the power of advanced computing.
Integrated Sensor Networks in Arctic Alaska
Understanding the Changing Natural-Built Landscape in an Arctic Community Navigating the New Arctic (NNA) is one of The National Science Foundation’s 10 Big Ideas. NNA projects address convergence scientific challenges in the rapidly changing Arctic. Arctic research is needed to inform the economy, security and resilience of the Nation, the larger region and the globe. NNA empowers new research partnerships from local to international scales, diversifies the next generation of Arctic researchers, enhances efforts in formal and informal education, and integrates the co-production of knowledge where appropriate. This award fulfills part of that aim by addressing interactions among social systems, natural environment, and built environment in the following NNA focus areas: Arctic Residents, Data and Observation, Education, and Resilient Infrastructure.
COVID Saliva Testing
In cooperation with the UVA Saliva Testing Lab, the UVA Health System, and the Virginia Department of Health, the “Be SAFE” saliva
testing program was launched in late 2020. Now a retired project, Be SAFE used saliva samples to detect the COVID-19 virus through a diagnostic PCR test.
Research Computing provided computational, storage, and data integration expertise to this project.
Storage FAQs
Accidental File Deletions Why Lease Storage Leased Storage Options File Transfer with Globus Permission Denied Error with Globus Help! I deleted my files accidentally! What can I do? For your home storage, the directory is /home/.snapshots . Snapshots are created once per day. Find the date you wish to find the snapshot for and navigate to your computing id. For GPFS Research Project (leased) storage, the directory is /gpfs/gpfs0/project/.snapshots. Neither Research Standard (leased) nor scratch storage is backed up in any way. Why should I lease storage? Leasing storage from Research Computing means that you do not have to run your own data server or backup system.
Research Data Storage
$(document).ready(function() { $("#status-message").hide(); updateStatusMessages(); setInterval(checkStatusMessages, 6000); }); function updateStatusMessages() { $.getJSON(‘https://tja4lfp3da.execute-api.us-east-1.amazonaws.com/api/messages' , function(data) { var messageData = ‘'; $.each(data, function(key, value) { var converter = Markdown.getSanitizingConverter(); var timestamp = value.body.substr(0,19); var messageBody = value.body.substring(timestamp.length+1).replace("<br>", "
“); var messageLength = messageBody.length; if ( messageLength = millisPerDay) { var datestr = now.toDateString(); } else { var datestr = post_date.toDateString(); } msg = “[” + datestr + “] “+ msg; } } $('#status-message-'+keywords[j]).html(converter.makeHtml(msg)); } }); }); }; There are a variety of options for storing research data at UVA. Public and internal use data storage systems can be accessed from the Rivanna and Afton high performance computing systems.
Graphical SFTP/SCP Transfer Tools
Several options are available to transfer data files between a local computer and the HPC system through user-friendly, graphical methods.
Off Campus? Connecting to Rivanna and Afton HPC systems from off Grounds via Secure Shell Access (SSH) or FastX requires a VPN connection. We recommend using the UVA More Secure Network if available. The UVA Anywhere VPN can be used if the UVA More Secure Network is not available. Only Windows and Mac OSX operating systems are supported by the Cisco client provided by ITS. Linux users should refer to these unsupported instructions to install and configure a VPN. The More Secure Network requires authentication through Duo; users should follow the instructions on the dialog box to enter "
