| Anaconda | 2023.07-py3.11 |
The open-source Anaconda Distribution is the easiest way to perform Python/R data science and machine learning on Linux, Windows, and Mac OS X. |
| R | 4.3.1 |
R is a free software environment for statistical computing and graphics. |
| RStudio Server | 2023.06.2 |
RStudio Server enables you to provide a browser based interface to a version of R running on a remote Linux server. |
| Perl | 5.26.3 |
Perl is Larry Wall's Practical Extraction and Report Language. |
| OpenJDK | 12 |
Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers. |
| Atom Text Editor | 1.14.3 |
Atom is a free and open-source text and source code editor. |
| Rodeo | 2.5.2 |
Rodeo is a Native Python IDE for Data Science. |
| Emacs | 24.3.1 |
A text editor characterized by its extensibility. |
| LibreOffice | 5.3.6.1 |
LibreOffice is a free and open-source office suite, a project of The Document Foundation. |
| FastX Server | 2.4.16 |
FastX enables users to start an X11 desktop environment on a remote system. |
| JupyterHub | 3.1.1 |
JupyterHub is multi-user, multi-notebook server for Jupyter Notebooks. |
| JupyterLab | 3.6.3 |
JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. |
| Matlab | 2023b |
MATLAB is a multi-paradigm numerical computing environment and proprietary programming language developed by MathWorks. Matlab usage by UVA affiliates is covered by a site license. |
| Apache cTAKES | 4.0.0.1 |
cTAKES is an open-source Natural Language Processing system that extracts clinical information from electronic health record unstructured text. |
| Knime | 3.7.2 |
KNIME is a free and open-source data analytics, reporting and integration platform. KNIME integrates various components for machine learning and data mining through its modular data pipelining concept. |
| Fiji | 1.53t |
Fiji is a scriptable image processing program, bundling a lot of plugins that facilitate scientific image analysis. |
| PostgreSQL | 14.5 |
PostgreSQL is an advanced, enterprise-class, and open-source relational database system. PostgreSQL supports both SQL (relational) and JSON (non-relational) querying. |
| MRtrix3 | 3.0.2 |
MRtrix3 provides a large suite of tools for image processing, analysis and visualisation, with a focus on the analysis of white matter using diffusion-weighted MRI. |
| PeakSeq | 1.31 |
PeakSeq is a program for identifying and ranking peak regions in ChIP-Seq experiments. |
| PLINK | 2.00a20230303 |
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. |
