Rivanna Software Updates: March 11, 2020
The Rivanna maintenance has been completed on March 11 and the system is back in service.
The following software modules have been removed from Rivanna during the maintenance period. Please use the suggested newer versions:
gcc/5.4.0
& toolchains ->7.1.0
- All modules that depend on
gcc/5.4.0
are now available undergcc/7.1.0
. - The only exception is
cushaw3/3.0.3
. Please contact us if you need to use it.
- All modules that depend on
pgi/19.7
& toolchains ->19.10
- All modules that depend on
pgi/19.7
are now available underpgi/19.10
.
- All modules that depend on
anaconda/5.2.0-py2.7
->2019.10-py2.7
- All modules that depend on
anaconda/5.2.0-py2.7
are now available underanaconda/2019.10-py2.7
.
- All modules that depend on
tensorflow/1.6.0-py27
,-py36
->1.12.0
,2.0.0
, or2.1.0
- If you must use version 1.6.0, please pull the image from our repository on Singularity Library.
singularity/3.1.1
->3.5.2
boost/1.66.0
->1.68.0
julia/1.0.2
,1.0.3
->1.3.1
cushaw3/3.0.3
- no replacement
The following upgrades have taken place during the maintenance period:
- JupyterLab v1.2.6
- Python 3.7 Jupyter kernel - based on
anaconda/2019.10-py3.7
- The previous “Python 3” kernel (based on
anaconda/5.2.0-py3.6
) has been renamed as “Python 3.6”.
- The previous “Python 3” kernel (based on
anaconda/2019.10-py2.7
,-py3.7
gcc/9.2.0
& toolchains - gcc/7.1.0 remains the defaultsingularity/3.5.2
- now default versiongurobi/9.0.1
tensorflow/2.1.0-py37
- Singularity container module & Jupyter kerneljulia/1.3.1
- module & Jupyter kernelansys/2020r1
samtools/1.10
rust/1.41.0
cmake/1.16.5
New tools:
- LibreOffice - through FastX Web desktop environment
pytorch/1.4.0
- Singularity container module & Jupyter kernelopenfoam 7
(version 1909) - open-source CFD softwaregoolfc/6.5.0_3.1.4_10.1.168
- GOOLF toolchain (GCC + OpenMPI + OpenBLAS + ScaLAPACK + FFTW) with CUDA supportatom/1.43.0
- Atom text editorrclone/1.51.0
- Rclone for cloud file syncing (supports Google Drive)nodejs/12.14.1
- Node.js JavaScript runtime environmentninja/1.10.0-py3.6
- Ninja build systemmeson/0.53.1-py3.6
- Meson build systemgtk+/3.24.14
- GTK+ 3 libraries for GUI applicationsfribidi/1.0.8
- Free Implementation of the Unicode Bidirectional Algorithmatk/2.28.1
- Accessibility Toolkittree/1.8.0
- Tree structure of file systemgnupg/2.2.19
- GnuPG encrypt and sign data